rs224603390 SNP Detail

Summary

• ID
  rs224603390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31149839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCGGGC TGGCCCCAGC
  TCTAAGCGTC CGGCGACGCG GGCTTCCGGG CTTGGCGCCT AACCTGCCCG CGCCCCTGTG
  GGTGCCACGG CTCAGGGTGG GTCAAGTGGG GGGAGGCGCA GCCCTGGGGC GCCTAGGTAA
  CCCTAGAGAA CTTCCCGCGG GCCGGGGGCG TGGGGTATTT CCACCGGCGG CCCCCGCAGT
  R
  GGGCGATGTG GGGAGGGCAC TTAGGGTGAT CCCAGTCACA GAGGTGGGGG TTGGGAGGAC
  TCCTACTTCC TCTGCCCCCT CTCACCTCAC CAGACGCCGG GAGTCCCCTG CTTCCCTGTC
  CTTTGGGTTG ATGATGAGTG GGTGTCTCTG CGTGTGCGCA GGGCTGTGGG GGCGCCCCTG
  GTCTAGGTCA TGCCTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433269	MGP_WTSI_3_30994612	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224603390					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433269	MGP_WTSI_3_30994612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31149839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	1689 bp downstream
Rr397631	regulatory region 397631	1873 bp downstream
Rr574879	regulatory region 574879	1783 bp distal
Rr574880	regulatory region 574880	1392 bp distal
Rr574881	regulatory region 574881	555 bp distal
Rr574882	regulatory region 574882	within coordinates
Rr574883	regulatory region 574883	502 bp distal
Rr574884	regulatory region 574884	141 bp proximal
Skil	SKI-like	within coordinates
Tssr28706	transcription start site region 28706	1783 bp downstream
Tssr28707	transcription start site region 28707	1640 bp downstream
Tssr28708	transcription start site region 28708	1002 bp downstream
Tssr28709	transcription start site region 28709	978 bp downstream
Tssr28710	transcription start site region 28710	961 bp downstream
Tssr28711	transcription start site region 28711	742 bp downstream
Tssr28712	transcription start site region 28712	714 bp downstream
Tssr28713	transcription start site region 28713	567 bp downstream
Tssr28714	transcription start site region 28714	207 bp upstream
Tssr28715	transcription start site region 28715	684 bp upstream
Tssr28716	transcription start site region 28716	1150 bp upstream
Tssr32911	transcription start site region 32911	137 bp downstream