rs224613189 SNP Detail

Summary

• ID
  rs224613189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142608642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCCTGG AGTGCTGAGG
  CTGGGTGAAG CTGCTCGTTT CCCAGGCAGC TGGGGTGGAG TCCCAACATG TCCCTGGGGT
  CTCTATTGAG GCTCCAGGAA ACGGTTCTGA AGCCTCTCCC TGCTCCCAGG GACCTGCCTA
  CTGACTGCAG AACAGTGAAA ACTGTAGCCT TTCACAATCC CACAGACCTC TCCTCCCTAC
  Y
  CATGTTGGCC CCACAGTGGA TAGGGATGTG GAGCAGAACC AGGCTACAAC TGGTGGACAC
  CACCCTGGCA GAGGGACTCC TTTTGTCCCT CGTGTGGCAA GGTTTGTACT GTGGCTGATA
  GTTCCCTGAT ATCATGAAAT TGAACCTTTG GGGAGCCCCA CCCCACCACT CTGGCCCTTA
  GTCTTCACTT CCTCCCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473939	CHEV_7_150240810	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224613189					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142608642 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Cpgi19971	CpG island 19971	1225 bp distal
R74862	expressed sequence R74862	1219 bp upstream
Rr167007	regulatory region 167007	within coordinates
Rr381610	regulatory region 381610	within coordinates
Tssr70270	transcription start site region 70270	1422 bp downstream
Tssr70271	transcription start site region 70271	1362 bp downstream
Tssr70272	transcription start site region 70272	1336 bp downstream
Tssr75917	transcription start site region 75917	1446 bp upstream