rs224616242 SNP Detail

Summary

• ID
  rs224616242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113421563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTTGA CGGCCAACTC
  TGACAGTTGT GTTCAGTGAT CCAAGGTGGG GATGTGGGGT TGGCAGTGAT GTAATACAGG
  CACACACACT CACACACTTG GTAGATGATG CAATCTCCAA CAAGCTCCAA CAACTTCACA
  TGTATGCATA CACACACATA CATTTGGTAG ACGAAGCAAA GCTCGAACAG CCCTTTCACC
  Y
  ACAGCTTATG TATCCCAGCC AAATCTTTGA ATCACGATGT GGTTACATTC TATTTTTCCT
  TAAGTGAATG ATTACAATGA AGTTTCCCAA TACCCTTGCA CGATCAAGTG TTTTACATAT
  TATGGGTGAA AAAAAAATTA TTCCCAAGAA CCCACATGCA TTCGTAACTA AGCAACCTGT
  TATAGATTAA CCAAGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910889	CHEV_6_113394596	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224616242					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113421563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	1494 bp distal
Jagn1	jagunal homolog 1	within coordinates
Rr145547	regulatory region 145547	762 bp distal
Rr399832	regulatory region 399832	1957 bp downstream
Tssr58212	transcription start site region 58212	1975 bp downstream
Tssr58213	transcription start site region 58213	1967 bp downstream