rs224623000 SNP Detail

Summary

• ID
  rs224623000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGCCGAG CCTGCGCACA
  GTCGCCTGGC TTGCCGCGTG TGGCAGTCCC ACGGCTCGCT CTTTTACGCC TGCGTGTCGC
  GCCTAGCCTC ACGCTCTACG TCGCAGCCAC ACGGTACTCC CTGCTCTTCC GTGGCCTGAG
  CTTTGGGTGA TCTAGTGGGC TTCCCAGTGC ATGGCCAGAA TGTCAGGGGC CCCGCAAGGA
  Y
  TGGACCAAAG CTAGGCGCTT AGGAAAACGG AGGCCGAACA TTGGGTTTTG AGGGCTTTGT
  TTTTAAAAAC AAACAAACAA ACAAAAAACA GCTGGGCGTG GTGGCGCACG CCTTTAGTCC
  CAGCACTTGG GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA
  GTGAGTTCCA GGACAGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss383788694	MGP_WTSI_11_69495737	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224623000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788694	MGP_WTSI_11_69495737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	within coordinates
Rr450067	regulatory region 450067	400 bp distal
Rr450068	regulatory region 450068	177 bp distal
Rr450069	regulatory region 450069	within coordinates
Rr450070	regulatory region 450070	707 bp proximal
Rr450071	regulatory region 450071	1598 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	151 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	611 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	342 bp downstream
Tssr108773	transcription start site region 108773	1570 bp upstream
Tssr108774	transcription start site region 108774	431 bp upstream
Tssr108775	transcription start site region 108775	379 bp upstream
Tssr108776	transcription start site region 108776	339 bp upstream
Tssr108777	transcription start site region 108777	282 bp upstream
Tssr108778	transcription start site region 108778	254 bp upstream
Tssr108779	transcription start site region 108779	230 bp upstream
Tssr108780	transcription start site region 108780	156 bp upstream