rs224625261 SNP Detail

Summary

• ID
  rs224625261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAATGGA ATACTCTGAA
  CTCATCTCTG CTCTGGCTTC GCACTACTTA GAGGTTTAAA TAAATTGAAA AGCCATTACG
  TAATTTCCTA GCACTGACCC CAATTTTTAA AGAAGATTAT ATGGAAGGGA GAGCCAATGC
  ACAGAGGAGG AAAGGTAGTT TCCATCAAAT TATTTTCCTA TCGACAACAC ATTTGGCCAC
  W
  GAAGTGGGCA CAAGTCTTCC ATCCCTCTCT TGCCTTTCTT TCTTTGCCTC ACCACCCCCC
  CCCCACGCCC CCGCTAAATT CCCACCTTGT ACAAAAGCTC TGGCTCCCAG GCGAGGCTCT
  CCCACGCGCT GGGGATCAGG TGCAAAAGGC TCCTCTCTAA TAAACAGCCC ATTGAAAGGG
  CCGCCCGCTC TTTATTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354588329	MGP_WTSI_2_79295791	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224625261					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354588329	MGP_WTSI_2_79295791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	739 bp distal
Cpgi11843	CpG island 11843	921 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	305 bp downstream
Tssr24893	transcription start site region 24893	1674 bp upstream
Tssr24894	transcription start site region 24894	1359 bp upstream
Tssr24895	transcription start site region 24895	1318 bp upstream
Tssr24896	transcription start site region 24896	1242 bp upstream
Tssr24897	transcription start site region 24897	960 bp upstream
Tssr24898	transcription start site region 24898	924 bp upstream
Tssr24899	transcription start site region 24899	672 bp upstream
Tssr24900	transcription start site region 24900	662 bp upstream
Tssr24901	transcription start site region 24901	642 bp upstream
Tssr24902	transcription start site region 24902	603 bp upstream
Tssr24903	transcription start site region 24903	545 bp upstream
Tssr24904	transcription start site region 24904	667 bp downstream
Tssr24905	transcription start site region 24905	992 bp downstream
Tssr24906	transcription start site region 24906	1116 bp downstream