rs224630976 SNP Detail

Summary

• ID
  rs224630976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90406039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCAGGGAC CCTTGAATCA CCAAAGGGAC AGTATCCCGC
  AGGGCAGTCC AGCGCTGGGC ATGGGGGAGC CAGGAAGAAA GGGTGGGCCC TGCATATGTG
  K
  TTTGTTGGTT TTGTTTGTTT GTTTGTTTGT TTGTTTGTTT GTTTGTTTTT TATGCAGCTA
  GTGTTAAATA CTCTTTGCAA GCAAGTGGCT CCCTGCCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321852243	CHEV_6_90379051	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224630976					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90406039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17720	CpG island 17720			167 bp distal
Gm53295	predicted gene, 53295			within coordinates
Gm67990	predicted gene, 67990			within coordinates
Rr634196	regulatory region 634196			673 bp distal
Rr634197	regulatory region 634197			498 bp distal
Rr634198	regulatory region 634198			271 bp distal
Rr634199	regulatory region 634199			within coordinates
Rr634200	regulatory region 634200			157 bp distal
Tssr57646	transcription start site region 57646			492 bp downstream
Tssr62021	transcription start site region 62021			602 bp upstream