rs224634422 SNP Detail

Summary

• ID
  rs224634422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81357846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGAGCC TGGCCAGTCC
  ACTACCACCT CCAGCCCTCT CACTTTGCCC TTGCTCGCCG CACTCCAGCC AGCTGGCCAT
  TCTCTCAGCC TACCCACGTG CTCTTCTTTC TGTCTGGGAA GATTTTTTTC CCCTTCATTC
  CTACATGTGC TTCAGATCAC TGTTACACTG TCGCGTCCCT TAGGGGCTTA ACCGAAGGCC
  R
  TGGATGGCAT TGTTCCGGTC CATTTTTCTT CCTTGCACTT ACTGTTAGTA GTATCTCGTG
  TAAAATTATT GGTTTAATAT TCCAGACACA CCTGCAAACT CTTAGAAAGA TGTGGCTTTT
  TGCCCATAAT TGTAACCTCT ACTACCTACA ATGGGAATTC AAAGTCTTCC ACCAATATTT
  GTTGAATGAA TAAGTAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322286351	CHEV_7_88852984	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224634422					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81357846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19358	CpG island 19358	330 bp distal
Gm32579	predicted gene, 32579	54 bp downstream
Homer2	homer scaffolding protein 2	1173 bp upstream
Rr650185	regulatory region 650185	1300 bp distal
Rr650186	regulatory region 650186	664 bp distal
Tssr73349	transcription start site region 73349	1229 bp upstream
Tssr73350	transcription start site region 73350	1197 bp upstream
Tssr73351	transcription start site region 73351	1134 bp upstream
Tssr73352	transcription start site region 73352	1000 bp upstream