rs224640156 SNP Detail

Summary

• ID
  rs224640156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139807097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGAAAG GAAAAAGAAA
  ATTGGAGTAT GAGATCTCTG AGGAAATGTA TTCCCCTTAA CGACAGCCTA GAAACAGGAC
  TAAGGGGCTG GGCCCAGAAA GGAAAGTAGG TATCAAGGGC ATGCAAAAAA GTGTCTTGTG
  CATAATTCCT GCCAGGAAGG GAAAAAAATG TGTTTTTCTC TGCCACTGGT TGTCCCCCCC
  S
  CCCCCCGCCT GTTTACCATC ATTCTTTATG GCATGATACT CAGAATTAAG CTGGTTTTCA
  AGTAAGGTCT GTACAGGACA GAGACTGTGA CTCATTGTTT TGTTTCTGTA AGACTATGAG
  TTATTTGGTA TATTTTGAGA CACACTATTT CTTAAGTTAG GACTTTCCTG TATAAGAATT
  GATCTTTCTC CCTGAAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404752762	MGP_WTSI_X_137440887	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224640156					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404752762	MGP_WTSI_X_137440887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139807097 () rs orientation: forward

Symbol	Name	Function Class
Tssr162212	transcription start site region 162212	1163 bp upstream
Tssr162213	transcription start site region 162213	1206 bp upstream
Tssr162214	transcription start site region 162214	1254 bp upstream
Vsig1	V-set and immunoglobulin domain containing 1	1260 bp upstream