rs224644226 SNP Detail

Summary

• ID
  rs224644226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCCAAA TAATAGTTGG
  CTGCCTGAAT TCTTCAAGTT TCCACTCCAA CTTGATACCC TCATTGTATC CTACTCTAAC
  CCTTCATAAT CTTTCATGCT CTCATAACCT CCACTGATCA TTTCTTTCTC ATAGCACAGT
  CAAATAGTAA TAATAATTTA CTGTGTATCG AAGCACTTTC TAACCTAATG TAGGATTTAG
  Y
  CCTTTTCTCT CCCCCAAAGA GAATGCAACC CTTTGCTATT TAGTTCACTT ATATACCCTA
  GCATATAAGA GAGAGTCTGG TGCATATTAA GCATTTAAAT TGTTGAATGA ATATGCCTCC
  CTAATGATGC CTTATGAAGC CATCACAAAT AAAGCACTAT TGGTCAGGCA TGATGATTCC
  TGCCTATAGT CCTAGCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388626	CHEV_7_116077260	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224644226					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	520 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	812 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	669 bp upstream
Rr400539	regulatory region 400539	411 bp upstream
Rr652951	regulatory region 652951	1043 bp distal
Rr652952	regulatory region 652952	181 bp proximal
Rr652953	regulatory region 652953	401 bp proximal
Tssr68456	transcription start site region 68456	659 bp upstream
Tssr68457	transcription start site region 68457	771 bp upstream