rs224646780 SNP Detail

Summary

• ID
  rs224646780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4705404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCACTGTG CATGGTAGTC
  AAGCATTATA TTAACTTAGT CACATTCTTA GACCAGGCCT TTTTCTAAGA CAAAAGTCCT
  GTTATATAGC TCTGGCTGGC CTGGTACTCA GTTCTCCAGC CTTAGGCTTC TGGTGCTGAG
  ACTACAGGTG TGTCCTGCTA CACACAGCAA TGCCTGGTGC CTTGTCAGCT ACATTTACTT
  Y
  TACACAACTT CTTGGCGGGG TAGAACGCTG GGCCTTTAGA TCCGGTTCTA AGTGTTGAAT
  GTGATGTTTG GTCCTGAGGT GTTTTCAGAC CAAGCCGGCC AGATTTCCTG TGTGGCTGAG
  AAGAGTCTGC CCCCATTAGT TGGACAGCTT ATTAAATGTT TCGGGCTGTG CTTCTAGACT
  TTCTTTGCCC TAGGGATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395254942	MGP_WTSI_16_4887540	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224646780					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395254942	MGP_WTSI_16_4887540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4705404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7923	CpG island 7923	597 bp distal
Gm60219	predicted gene, 60219	736 bp upstream
Mgrn1	mahogunin, ring finger 1	within coordinates
Rr510952	regulatory region 510952	1144 bp distal
Rr510953	regulatory region 510953	305 bp distal
Tssr136882	transcription start site region 136882	1390 bp downstream
Tssr136883	transcription start site region 136883	1335 bp downstream
Tssr136884	transcription start site region 136884	1321 bp downstream
Tssr136885	transcription start site region 136885	1272 bp downstream
Tssr136886	transcription start site region 136886	1256 bp downstream
Tssr136887	transcription start site region 136887	1220 bp downstream