rs224646828 SNP Detail

Summary

• ID
  rs224646828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caaggatta aaaagaaaaa aagacaatta
  gacaacattg tagcctgacc ccagccagtt ctgaggctga agcaagttta ttttttcctg
  tctgctttta taccacttta agtatctgca aattgataag gtcagttctg ggtcaaggaa
  Y
  aagcaaggca ataaacaatc caggaaacac ctttctaggg gctagtccgg atgactaaga
  caaaaggaag gccacacaag cctctgctgg gtccacttgg agctttgcat taactcaaat
  gcaaatgttc ttaatctggg cctatttcct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635033	CHEV_1_10868410	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224646828					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948553 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	1958 bp upstream
Rr11561	regulatory region 11561	1648 bp proximal
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	283 bp upstream
Tssr5932	transcription start site region 5932	1956 bp upstream