rs224674153 SNP Detail

Summary

• ID
  rs224674153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:108217535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGGCCCT GGCATTGGCT
  TGGTGATTAC TGGCTGCACT CTGGGGGGCG GTTCTTCCAT GATGGTGTTT CCTCTAAATT
  TGCACGGAGA AACACCTGAT TTCCAGGAAA ATCCCCTCAG ATGGGCGCTG GTCCCATCCA
  TTCCCGATGC CTTTCCACCT AATGAAAGGT GGTTTCACTA CTAAGAATAA AGTGCTGAAT
  R
  TCAGAATTGT TTGTGTGTCC TGTGTCATTG TCACCTTTTG GATAGCCTCA TAGTCAGGGA
  TAAGGAACTC AATCCCAGAG CCTAAACGTC CCTTTCCCCG CCCCTTATGC TTTTCTTTCT
  CCCTGTCCCA GGACATGGTT AAGGTCAGTC TTGAGTCGCC GTTACAGCAG AGGCCATACT
  CCAGAAGGAG GAAGCCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864970	MGP_WTSI_9_108242667	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224674153					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864970	MGP_WTSI_9_108242667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108217535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	161 bp distal
Gm57050	predicted gene, 57050	202 bp upstream
Gpx1	glutathione peroxidase 1	mRNA-UTR
Rr383883	regulatory region 383883	518 bp downstream
Rr686785	regulatory region 686785	1050 bp distal
Rr686786	regulatory region 686786	within coordinates
Rr686787	regulatory region 686787	1289 bp proximal
Tssr3010	transcription start site region 3010	586 bp downstream
Tssr87090	transcription start site region 87090	1266 bp downstream
Tssr87091	transcription start site region 87091	1238 bp downstream
Tssr87092	transcription start site region 87092	1104 bp downstream
Tssr87093	transcription start site region 87093	1089 bp downstream
Tssr87094	transcription start site region 87094	1052 bp downstream
Tssr87095	transcription start site region 87095	1037 bp downstream
Tssr87096	transcription start site region 87096	1026 bp downstream
Tssr87097	transcription start site region 87097	416 bp downstream
Tssr87098	transcription start site region 87098	349 bp downstream
Tssr87099	transcription start site region 87099	20 bp downstream
Tssr91519	transcription start site region 91519	443 bp upstream
Tssr91520	transcription start site region 91520	352 bp upstream
Tssr91521	transcription start site region 91521	256 bp upstream
Tssr91522	transcription start site region 91522	180 bp upstream
Tssr91523	transcription start site region 91523	within coordinates