rs224674828 SNP Detail

Summary

• ID
  rs224674828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCCTTCC ACACCTCCTC TTTCTAGGCT
  AGGAGGGGTT GGGTGAAAAG AGCAAATGGA AGGTCTGAAC TGAAAGTGGC CAACAGCAGG
  GACAAACCTG GCTCTGCACC ATCTTCGCcc ccgcccctcc cgccccctgc cccgccccgc
  M
  ccgatccccg ctccgcccTC TCACCCTGGG AGGAGGGATC GCTACAATGG ACCCTCCTGC
  GGGCTTTGTG CACTCTTGGA ATCCAGCTGT CGCCGCCCCG CGGAGCCCCG TGTCCCCCGA
  GGGCGCCCAT TTCCGGGCCG TCCATCACCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129383	CHEV_9_98325161	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224674828					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	within coordinates
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	1148 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685256	regulatory region 685256	1771 bp distal
Rr685257	regulatory region 685257	1613 bp distal
Tssr2984	transcription start site region 2984	341 bp upstream
Tssr86646	transcription start site region 86646	37 bp upstream
Tssr86647	transcription start site region 86647	120 bp upstream
Tssr86648	transcription start site region 86648	180 bp upstream
Tssr86649	transcription start site region 86649	217 bp upstream
Tssr86650	transcription start site region 86650	564 bp upstream
Tssr86651	transcription start site region 86651	746 bp upstream