rs224677127 SNP Detail

Summary

• ID
  rs224677127
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12568629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAACTTC AGTAAGATTG
  CATCCTTTTC TCCTTCCCCA CAGTAAACTC CGTTAAATGA CTTTGTCTTC TCTTGCCTCC
  GACCCACAGA CAGCCCCAAT CCGGATTCCC TCCCCCTCTA CACTAGTAGA GCCGTAGGTT
  CCATCTGTCC CCTCGTCCCG CCTTCCTTGC TCTGCTACGC GGCGTGCCTC GCTCAGCCGA
  M
  CTAACACCAG CACTTCCGGC CCACCCCCTT GCCCATGCCT AGCTTCCGTT TTGTCCAAGT
  TCTTTTGCTC CTGTTAGTGG GTTCGATTCT CTCCTAGCCT CGGTCTCTGT CCACAGAGGT
  ACTGGTGCTC AGCGTCTTAG TATCCTTCTT CAAAAGCTGC ATCCTAGTTC TTTAGCAGTC
  AATAACACAC TTTTCGGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370650247	MGP_WTSI_7_13420051	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224677127					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370650247	MGP_WTSI_7_13420051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12568629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	within coordinates
Rr642383	regulatory region 642383	within coordinates
Rr642384	regulatory region 642384	223 bp proximal
Rr642385	regulatory region 642385	291 bp proximal
Rr642386	regulatory region 642386	792 bp proximal
Tssr64479	transcription start site region 64479	41 bp upstream
Tssr64480	transcription start site region 64480	271 bp upstream
Tssr64481	transcription start site region 64481	546 bp upstream
Tssr64482	transcription start site region 64482	1248 bp upstream
Zfp110	zinc finger protein 110	59 bp upstream