rs224681384 SNP Detail

Summary

• ID
  rs224681384
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100128293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATTGAG CAAATCACAG
  ACAGGCAACC ACCAAGATGA TTGGCGAAAA AGAAGTGATT CCACGTTTTT CTTTACCATC
  CAAAAATACT GACCAAATAA GATGACTCAA GTCAAATATT GCAGGTTGGC AACAACTTGG
  ATGAACCCGA GGTTTTTATT TATCCTATGG ATTTAAATGA TGAGCCTTTT AGAAAAACTG
  K
  TTGTAGTGGT TTAGAGATTG GTCCCAAAGG CTCCTATGTT TGAATGTTTT AGTCACCATG
  CCATGGAACT GTTTGGGAAG GATTAGGAGG CATGGCTGTG TTGGGAGATG GTATTCATGG
  AATTTGCTTT GAGGTTTCAA AGGCCATACC AGGCCTTTCT GCCTGCTGCC TGTGGATCAG
  GATGGAAAGC TCTCAGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366010052	MGP_WTSI_5_100409453	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224681384					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366010052	MGP_WTSI_5_100409453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100128293 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	768 bp downstream
Cpgi16102	CpG island 16102	875 bp distal
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	1496 bp upstream
Rr378342	regulatory region 378342	616 bp downstream
Tssr47472	transcription start site region 47472	1864 bp downstream
Tssr47473	transcription start site region 47473	1801 bp downstream
Tssr47474	transcription start site region 47474	1750 bp downstream
Tssr52064	transcription start site region 52064	1575 bp upstream
Tssr52065	transcription start site region 52065	1521 bp upstream
Tssr52066	transcription start site region 52066	1468 bp upstream