rs224696842 SNP Detail

Summary

• ID
  rs224696842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40479133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTGCTA GCAGTAATCA
  ATAAATCCTT TACTTATAGT TGGATTGAGT CTGTGATCTT GTCCCAGGGG TCAGAGACTC
  CATGACAATG GATGGTGCAG TGTACTAGTT CCTGACGAGT GTTCAGGGTT GACTTAACTC
  GAGCCTGGCT TCTATAGATT CTGGCATCTA GAAAAAGATG CAAGACTCCC CCACCCCCGC
  Y
  CCCGCCCCCA CCCCCAGACC CCATTCCCTT TGCCATAGTT CCCAGGGCAG AGTTTGCAAG
  GGAAGTAATG CAAGCAGGAG CTGGCTCTTC CTCTCCGCCA GATGCTTCTC AGTGGTTTGT
  GAATGAATGA ATGAATGGAG ATTAAGCTCC AATGATGCTA AAGTGAACTC CCAGCCTAAC
  ACAGGCACCT AAAGACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss380125434	MGP_WTSI_10_40322943	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs224696842					SNP	T	T	T	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380125434	MGP_WTSI_10_40322943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40479133 () rs orientation: forward

Symbol	Name	Function Class
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	within coordinates