rs224697408 SNP Detail

Summary

• ID
  rs224697408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100945126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCACCG AGTCCTGCGC
  CCTAAGCGAG GGTGTGGGTG GCTCGGGCGT TGCCCGCCGG TCCGCAGATA GCCGGACCAG
  CTCCGCTGCC GCCCGCCGCT GTTGTCCCAC CGAGTCCTGC GCCCCACGCC GGGATGCGGG
  TGGCTCGGGC GTCGCCAGCA AGTCCTCAGA TAACCGGGCC AACTCCTTGT CCAGGTCGGG
  Y
  TCGGGTACCT CGAGGAGTGA ACGAAAGTGG TTGCACTCCT CGGGGGTCAG CAGTTCCGCC
  AGGCGGACTG CTGTGTGGGG GCCCATGGCG TCCAGCGCGC TCGTGAGGGG CAGCAACCGG
  TTACAGAGGG CCAGGATCAG CGCCCACACC ATGACTCGGC CTGAGGGAGG GGCTTCGAAT
  GCCGAGGCTC TGTTGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395189561	MGP_WTSI_15_100877676	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224697408					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395189561	MGP_WTSI_15_100877676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100945126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	within coordinates
Rr509881	regulatory region 509881	397 bp distal
Rr509882	regulatory region 509882	142 bp proximal
Scn8a	sodium channel, voltage-gated, type VIII, alpha	1307 bp downstream
Tmdd1	transmembrane and death domain 1	Coding-Synonymous
Tssr136507	transcription start site region 136507	117 bp downstream
Tssr136508	transcription start site region 136508	135 bp downstream
Tssr136509	transcription start site region 136509	156 bp downstream
Tssr136510	transcription start site region 136510	175 bp downstream