rs224701015 SNP Detail

Summary

• ID
  rs224701015
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78070671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCCAGCA GCGTCTGACT TCTAAGTTGC
  CTAAGACTCT CTCAATGTTT AAACACCTTC TGGGGACAGC AGAGTGCCTA GGCCTATCTA
  CTATCTAGGT AAACAGACCA GGATGTCATA CAGAGTTAGA CCCTCGTGGA CAAAGTCTAA
  M
  GCTAGTGAAT AAAGAAACCT TAGCAGTAAA GTTGGTGTTC CTCAGCTTCC GACTGATATG
  ACCTGTTTTC ATGGGCCCTT GTTCTGTCAC TTGTCCCCTA GGCTATGGGC GCCTTCTTCT
  CTGGTATCTT TTGGAAAAGA TTTGTTGGTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756289	CHEV_11_77993347	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224701015					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78070671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	444 bp distal
Gm73764	predicted gene, 73764	1273 bp upstream
Mir7653	microRNA 7653	958 bp downstream
Rpl23a	ribosomal protein L23A	1090 bp downstream
Rr402759	regulatory region 402759	1717 bp downstream
Rr451897	regulatory region 451897	1284 bp distal
Rr451899	regulatory region 451899	1845 bp distal
Rr451900	regulatory region 451900	1073 bp distal
Rr451901	regulatory region 451901	564 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	1842 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	1457 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103232	transcription start site region 103232	1698 bp downstream
Tssr103233	transcription start site region 103233	1150 bp downstream
Tssr103234	transcription start site region 103234	1073 bp downstream
Tssr103235	transcription start site region 103235	859 bp downstream
Tssr103236	transcription start site region 103236	843 bp downstream
Tssr109377	transcription start site region 109377	1249 bp upstream