rs224709561 SNP Detail

Summary

• ID
  rs224709561
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:58661082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCACCAG TCATGAATGA
  ATGATTGACA GCTCTATCTG TGGCAAAGGG ATAATAGAAA AGCTAGGTTG GGTGTTTATG
  ATACATTCCA ACTGGTAATG CTTTCCAGGT AGCAACTTTA ATCCAAGCAT TTAAAGGGTA
  GACACTGGTT CAGGAGTCCA AGACTGTCCA CAGCTGTTTA ATGAGTTGAA GGCATTTGGT
  S
  TACATGAGAC CCTGCTCCAA ACAAAGCAAG ACCCAGTTAT AATATCTTGA ACTTACACTG
  GATTTATTGA GTAATAATTC CATTATCCTT GGAGGATTAT TAGAACATGT ACATATCTCC
  TAATGTTGGA TAGATTATAA AGATAGATGA TAGATAGATA GATAGATAGA TAAGTGGATG
  GATGGATGGG TAGGTAGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923758	MGP_WTSI_19_58747140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224709561					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923758	MGP_WTSI_19_58747140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58661082 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	Intron
Tssr5571	transcription start site region 5571	471 bp upstream
Tssr157263	transcription start site region 157263	929 bp downstream
Tssr157264	transcription start site region 157264	871 bp downstream
Tssr157265	transcription start site region 157265	819 bp downstream
Tssr157266	transcription start site region 157266	422 bp upstream
Tssr157267	transcription start site region 157267	436 bp upstream
Tssr157268	transcription start site region 157268	494 bp upstream
Tssr157269	transcription start site region 157269	1091 bp upstream
Tssr157270	transcription start site region 157270	1154 bp upstream
Tssr159957	transcription start site region 159957	911 bp upstream
Tssr159958	transcription start site region 159958	784 bp upstream
Tssr159959	transcription start site region 159959	465 bp downstream
Tssr159960	transcription start site region 159960	519 bp downstream