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rs224717435 SNP Detail
Summary
  • ID
    rs224717435
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49025664 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTTACAAA CATCCTATGT
GGTCTGTCAT TTTGGATGTT ATGTAAATGG GTTCACATCA TGTGCTGTGT TCTTTGCCCC
TCTTTGCTAA ATAACCACAG AAAGCTTTCA GTTACTGTGC ATGGAAATCT CTCACACCTG
ACCGGGTGTC GCACAGTGTC ACAGGGTGTA CTGATAAACA CCCACAAGCT TGTTGGTGAG
Y
AACGAAGGGA TCGCAAGTCC AGTTACAAAT GTAGCAGTAC TGGGCTAGTC CAGACATACA
GCTTCATCTC ACTCTAAACC CCCTCCCTCC CCGCTCTCCT CCCTCCTCCT ACATTTCCCT
TTCCCCAGCC TCTTATGTAG CCCAGGCTAG CTTCAAACTC ACTATTATCG TCTGGTGATC
CTCTAGCCTT CACCTTCTAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235248 MGP_WTSI_6_48998729 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224717435 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235248 MGP_WTSI_6_48998729 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49025664 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56342 transcription start site region 56342 1977 bp downstream
Tssr56343 transcription start site region 56343 1431 bp downstream
Tssr56344 transcription start site region 56344 1407 bp downstream
Tssr56345 transcription start site region 56345 1388 bp downstream
Tssr56346 transcription start site region 56346 1335 bp downstream
Tssr56347 transcription start site region 56347 1317 bp downstream
Tssr56348 transcription start site region 56348 1294 bp downstream
Tssr56349 transcription start site region 56349 973 bp downstream
Tssr56350 transcription start site region 56350 944 bp downstream
Tssr56351 transcription start site region 56351 917 bp downstream
Tssr56352 transcription start site region 56352 898 bp downstream
Tssr56353 transcription start site region 56353 830 bp downstream
Tssr56354 transcription start site region 56354 816 bp downstream
Tssr56355 transcription start site region 56355 792 bp downstream
Tssr56356 transcription start site region 56356 774 bp downstream
Tssr56357 transcription start site region 56357 762 bp downstream
Tssr56358 transcription start site region 56358 744 bp downstream
Tssr56359 transcription start site region 56359 713 bp downstream
Tssr56360 transcription start site region 56360 666 bp downstream
Tssr56361 transcription start site region 56361 1152 bp upstream
Tssr56362 transcription start site region 56362 1380 bp upstream
Tssr56363 transcription start site region 56363 1667 bp upstream
Tssr60849 transcription start site region 60849 1368 bp upstream
Tssr60850 transcription start site region 60850 1315 bp upstream
Tssr60851 transcription start site region 60851 853 bp upstream
Tssr60852 transcription start site region 60852 824 bp upstream
Tssr60853 transcription start site region 60853 812 bp upstream
Tssr60854 transcription start site region 60854 795 bp upstream
Tssr60855 transcription start site region 60855 750 bp upstream
Tssr60856 transcription start site region 60856 723 bp upstream
Tssr60857 transcription start site region 60857 622 bp upstream
Tssr60858 transcription start site region 60858 1709 bp downstream
Tssr60859 transcription start site region 60859 1751 bp downstream
Tssr60860 transcription start site region 60860 1765 bp downstream
Tssr60861 transcription start site region 60861 1783 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory