rs224718592 SNP Detail

Summary

• ID
  rs224718592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25153621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCGGGG CCTGCCCCGC
  AGTGCGGTCA ATCGCTCGCT TTCTAATGGA CCCATGACTC AGGAATCCCC TACCGGCCCT
  GCCAATGGGT TGTCAGGCTC TCCGCCTGTA CCGGGAAAGT GGAAGCCAAA GGTGGAGTCA
  AAGGAACCCT CTCTCCACCC GCCCCCAAGC CCTGGGACTC CAAGTGCCAC TTCAGTTGGG
  Y
  CCCCTGCCTT CCCAGCGCCC AGCCCAGCCA GTGCCACTCC CAGTCAGCGC CAGTGGGTCT
  CCTCTGCCAC CAGCGCCAAT GATTCCTTTG AAATAAGGCC ATCCTCCAAG CCAGACATGG
  AAACTATCCC AATCGGGGAC CTTCAGGCCA GGGCCCTGGC CAACCTCCGA GTGAACTCCC
  GCAACTCCTT CGTGTTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405727	MGP_WTSI_2_25119129	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224718592					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405727	MGP_WTSI_2_25119129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25153621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	within coordinates
Rr396819	regulatory region 396819	1019 bp downstream
Rr553041	regulatory region 553041	981 bp distal
Tprn	taperin	within coordinates
Tssr16679	transcription start site region 16679	1066 bp downstream
Tssr16680	transcription start site region 16680	1046 bp downstream
Tssr16681	transcription start site region 16681	939 bp downstream
Tssr16682	transcription start site region 16682	399 bp downstream
Tssr16683	transcription start site region 16683	390 bp downstream
Tssr16684	transcription start site region 16684	262 bp downstream
Tssr16685	transcription start site region 16685	241 bp downstream
Tssr16686	transcription start site region 16686	228 bp downstream
Tssr16687	transcription start site region 16687	310 bp upstream
Tssr16688	transcription start site region 16688	661 bp upstream
Tssr16689	transcription start site region 16689	695 bp upstream
Tssr16690	transcription start site region 16690	1948 bp upstream