rs224733005 SNP Detail

Summary

• ID
  rs224733005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACTTT GGCAACACCT
  CTTTGGGCCT CCTAGACAGA GCCACAAGGT GAGTAAGGTC CGCCTTACTG AGACTTGCCA
  CTGGCCTGCT CTGCAGCCAT GCTCTCCAAC AAAAACTGGT CCCGGGGGCT GGCGAGATGG
  CTCAGCGGGT AAGATGACTG CTCTTCCGAA GGTCCTGAGT TCAAATCCCA GCAACCACGT
  K
  GTGGCTCACA ACCACCCGTA ATGAGATCTG ACGCCCCCTT CTGGTGCGTC TGAAGACAGC
  TACAGTACTT ATGTATAATA ATAAATAAAT CTTCAAAAAA AAAAAAACCA AAAACCAAAA
  ACAAACAAAC CAACCTGTGG TTCCTGACCC TCTTCCCCCC TCACAGAGGT CTTCCCCCCT
  CTCTCACAGA GGTCTTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390220	MGP_WTSI_12_113914067	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224733005					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390220	MGP_WTSI_12_113914067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642290 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1024 bp upstream
Cpgi5173	CpG island 5173	947 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	317 bp downstream
Rr473553	regulatory region 473553	1591 bp distal
Rr473554	regulatory region 473554	1435 bp distal
Rr473555	regulatory region 473555	1456 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	853 bp distal
Rr473558	regulatory region 473558	388 bp distal
Rr473559	regulatory region 473559	197 bp distal
Rr473560	regulatory region 473560	28 bp proximal
Tssr115391	transcription start site region 115391	1433 bp downstream
Tssr117877	transcription start site region 117877	1829 bp upstream
Tssr117878	transcription start site region 117878	1770 bp upstream
Tssr117879	transcription start site region 117879	1581 bp upstream
Tssr117880	transcription start site region 117880	1489 bp upstream
Tssr117881	transcription start site region 117881	1471 bp upstream
Tssr117882	transcription start site region 117882	1092 bp upstream
Tssr117883	transcription start site region 117883	1042 bp upstream
Tssr117884	transcription start site region 117884	1019 bp upstream