rs224735737 SNP Detail

Summary

• ID
  rs224735737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71246793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCAATG TGAGAGACCA
  ACGAGAACGT TTAGAGACTG AATTAAGGGG GTGCTAAATA AACAAGGGGA ATGGCATTGA
  AAATAAAGGT GAAGGGCTAC CCAGATGGCT CAAAGGTTAA GAGCTCTGTA CTGCTTTTGC
  AAAGGACCTG AGTCAGGTTC CCAAAACCCA CATCAGACCA CTTATAACCA GACATGTCTC
  Y
  AGGGGATCTG ATGCATCTGA CCTCCTAGGA CACACACACA TGGGCACATA CCGTCTCCAC
  ACAGAAACAC ACTACACGCA GGGCGTGGTG GCTGGCACAC ACCTTTAATC CCAGCACTTG
  GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGATCTACAA AATGAGTTCC
  AGGACAGCCA GGGCTACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368722048	MGP_WTSI_6_71219803	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224735737					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368722048	MGP_WTSI_6_71219803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71246793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	1593 bp proximal
Krcc1	lysine-rich coiled-coil 1	1868 bp upstream
Mir8112	microRNA 8112	1862 bp upstream
Rr136432	regulatory region 136432	593 bp distal
Rr146429	regulatory region 146429	407 bp proximal
Rr150236	regulatory region 150236	1793 bp distal
Rr379579	regulatory region 379579	within coordinates
Rr379580	regulatory region 379580	912 bp upstream
Tssr56988	transcription start site region 56988	1065 bp upstream
Tssr56989	transcription start site region 56989	1766 bp upstream
Tssr56990	transcription start site region 56990	1863 bp upstream
Tssr61348	transcription start site region 61348	905 bp downstream
Tssr61349	transcription start site region 61349	922 bp downstream
Tssr61350	transcription start site region 61350	1672 bp downstream