rs224750626 SNP Detail

Summary

• ID
  rs224750626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75101387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGTGAAG TTGCACGACA TTCTACCACT
  CGGGTTCCTC TCCCAGGGAT AGTTCCTAAA ATACCCTGCA GGGGGCAGTA AGGTCCTACA
  GACCATCTGT CGAGCCCACG CCCTGTGCCA CCAAAGAGGG CAAACCTTAG GCCCTGCCGC
  Y
  AAAGGTCACA CGCCCCGCCC TCGAGCGCCC TAGGCGTCCA TCTGCCCCCC CAACCCCCGC
  TAGAACTTTG TCGCCCGCCT CTCATTTTTA CAGCATCCGC TGCACACAGT TACGGCTCAG
  GGCCCCAAAG GGGAACAAAA CTAATTCATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795814	CHEV_1_75121317	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224750626					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75101387 () rs orientation: forward

Symbol	Name	Function Class
Nhej1	non-homologous end joining factor 1	Intron
Rr371532	regulatory region 371532	within coordinates
Rr413341	regulatory region 413341	1409 bp distal
Rr413342	regulatory region 413342	within coordinates
Rr413343	regulatory region 413343	447 bp proximal
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	798 bp downstream
Tssr12335	transcription start site region 12335	193 bp downstream
Tssr12336	transcription start site region 12336	439 bp downstream
Tssr12337	transcription start site region 12337	485 bp downstream