rs224750626 SNP Detail

Summary

• ID
  rs224750626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75101387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGTGAAG TTGCACGACA TTCTACCACT
  CGGGTTCCTC TCCCAGGGAT AGTTCCTAAA ATACCCTGCA GGGGGCAGTA AGGTCCTACA
  GACCATCTGT CGAGCCCACG CCCTGTGCCA CCAAAGAGGG CAAACCTTAG GCCCTGCCGC
  Y
  AAAGGTCACA CGCCCCGCCC TCGAGCGCCC TAGGCGTCCA TCTGCCCCCC CAACCCCCGC
  TAGAACTTTG TCGCCCGCCT CTCATTTTTA CAGCATCCGC TGCACACAGT TACGGCTCAG
  GGCCCCAAAG GGGAACAAAA CTAATTCATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795814	CHEV_1_75121317	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224750626					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75101387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi409	CpG island 409	within coordinates
Nhej1	non-homologous end joining factor 1	within coordinates
Rr17462	regulatory region 17462	1987 bp distal
Rr17463	regulatory region 17463	1387 bp distal
Rr29642	regulatory region 29642	within coordinates
Rr371532	regulatory region 371532	within coordinates
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	798 bp downstream
Tssr12335	transcription start site region 12335	193 bp downstream
Tssr12336	transcription start site region 12336	439 bp downstream
Tssr12337	transcription start site region 12337	485 bp downstream