rs224753173 SNP Detail

Summary

• ID
  rs224753173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151925488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACCAATTGC TCTGCCTACA TCTCCCACTC TGCTATCCTG TTTTCTTGAC CTCCGGGACC
  TTGGGGGTCG GGGGAAGAGG CAGAAGCCCA GATGGCTGAC AGAACATAGT GGACCCTGGG
  TTGTGCTAGA AGCTGGTAGG AAGTTAAGTC TCCACAGGTC TGGAATCCAT AGGATCCCTT
  R
  GGAGACTAAC ATAAAACTCC TGCAGACGCT TGCTTGATCC TGTCCCCGGG CCAGCTGAGG
  AAACCCAGAG AAACCCAGAG AATTTCTCAT GCACAGCCAA AACTGCAGGC TGTTCCTCAG
  AAGGAGGCAG GAGAATGCCT TGCCTTGAAT TCTATCCAAA AAAGCTTTGG AAAAAGCCCC
  TTAGTGAATG ATGGGAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562098	CHEV_2_151909304	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224753173					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151925488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12435	CpG island 12435	897 bp distal
Rr567277	regulatory region 567277	within coordinates
Rr567278	regulatory region 567278	644 bp proximal
Scrt2	scratch family zinc finger 2	within coordinates
Tssr20758	transcription start site region 20758	1944 bp downstream
Tssr20759	transcription start site region 20759	1925 bp downstream
Tssr20760	transcription start site region 20760	1743 bp downstream
Tssr20761	transcription start site region 20761	1675 bp downstream