rs224755379 SNP Detail

Summary

• ID
  rs224755379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAGATTA ATATCCACCT
  ATAGGAAGGG TAACAGGGGC AGCTGGAATT AGTCACTGAA GGAGCTGTGA GGGTGGCACT
  AGTTGTGAGG TAGGGGACTC GTTAAGACAC TGCCAAGAGC CCTTAAACAC TCAAGAAGCA
  CTTAAACCAT AAGTGGAGGG GCAGAATGGG AGAGAAGAGA GAAAGACAGA CTAGGATTTG
  Y
  ATCTTCCTGG AGGTCCTCCC AGATTCGACC TCAGCGCTCT GTGGGAGGTG AGGATGCTGT
  AGGCTTTATC AGTGTATCCT CACCTGTAAT GGACTGACTC ATTCCAGTGT GGGCTGGGTG
  CCTCCTGTTC CTGCAAAGTC ATGGACAAAC CCAGGTAGGA GAAGAGGCTG CCCTGCATCT
  TGTCCCTGCA GCATCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408104	CHEV_17_48486317	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224755379					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654020 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1773 bp downstream
Rr335233	regulatory region 335233	820 bp distal
Rr335234	regulatory region 335234	19 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	575 bp downstream
Tssr145094	transcription start site region 145094	547 bp downstream
Tssr145095	transcription start site region 145095	499 bp downstream
Tssr145096	transcription start site region 145096	466 bp downstream
Tssr145097	transcription start site region 145097	509 bp upstream
Tssr145098	transcription start site region 145098	836 bp upstream
Tssr145099	transcription start site region 145099	1488 bp upstream
Tssr145100	transcription start site region 145100	1517 bp upstream
Tssr145101	transcription start site region 145101	1554 bp upstream
Tssr145102	transcription start site region 145102	1653 bp upstream
Tssr148525	transcription start site region 148525	1698 bp downstream