rs224761985 SNP Detail

Summary

• ID
  rs224761985
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100976295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTGGC ACACTGCTGA
  AGAGATGCCA GTTCTCCAGT GGTGAAGAAT GCAAATCCAC TCTCAGGACT GACCAGCAGA
  GCTCAGCCCT GCCCCCTCCT GCTCTTGTGC CTCCTCCTGC ATCCTGAGCC TTAGGAGCCC
  TCTCTAATTA ACAGAAGTCT GGTACTTCGG GCAGAGAGCT CAACCATAAA CTGATTAGTA
  W
  CCAACTCCTG CCAAGGGCTC GTTTAAGACA TTTGATAGCA CAGAGAGATG GCTTAAAATG
  TGCAGATTAA CTGGCCATTC CGCTTGGCTC TCTGTTTCAG CCATACACTA AATTGGATCA
  ACACAAAGCA ACATTTGTTT CCTGAAGCAA TTCAAGTTCT TTCGAGAGAG AAACTCCTTT
  CCACACTTAC AATTCACACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850791	CHEV_3_100872902	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224761985					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100976295 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581951	regulatory region 581951			within coordinates
Rr581952	regulatory region 581952			1193 bp proximal