rs224762736 SNP Detail

Summary

• ID
  rs224762736
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58625350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGC CCCCCCCCCC GCAACCCCCC
  M
  AAGACAGCAC CGCCGCCTAC CTGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319737718	CHEV_1_58643035	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224762736					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58625350 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi281	CpG island 281			within coordinates
Hycc2	hyccin PI4KA lipid kinase complex subunit 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3			206 bp upstream
Rr411456	regulatory region 411456			1728 bp distal
Rr411457	regulatory region 411457			11 bp distal
Rr411458	regulatory region 411458			within coordinates
Rr411459	regulatory region 411459			7 bp proximal
Rr411460	regulatory region 411460			204 bp proximal
Tssr93	transcription start site region 93			437 bp upstream
Tssr6781	transcription start site region 6781			190 bp upstream
Tssr6782	transcription start site region 6782			214 bp upstream
Tssr6783	transcription start site region 6783			400 bp upstream
Tssr11786	transcription start site region 11786			49 bp downstream