rs224769841 SNP Detail

Summary

• ID
  rs224769841
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACATTTC CTTTGGGGGG
  AAAGATCACT GTAAGTCCTG TGAACTGTGT ATATATGCAG CTAGTTGTAT TTTAAGAGTA
  AACTGTTACA AATTGCCTAA ATAATACTAT GTCTATAAGT GAATATAAAC ACGTATGCTT
  ATGTAAATAC ATGCATATAT ACATATATAC ATAGTGACCA AAAAAAAAAA AAAAAAAAAA
  M
  AACCTCTTAA CAGATTTGAC CAGTAAAGCA TTCCTAGCAT ATAAAAGAAC ATGGAATAAA
  CTTACTGTTC CCCAGGGTCT ACGTCTCGCA AGCCAATGTA CACGATGTCT TTGGCAGATA
  TGCAGGGAGT CACCCAGGAG AATCCTGGTA CATCTGGGAA CTAGAAACAA TGGTGTTTCC
  ATTTAGATAG ATGTGTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379755419	MGP_WTSI_10_24636515	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C	C	C	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224769841					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C	C	C	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379755419	MGP_WTSI_10_24636515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792607 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	1072 bp downstream
Tssr92747	transcription start site region 92747	982 bp downstream
Tssr97085	transcription start site region 97085	1216 bp upstream
Tssr97086	transcription start site region 97086	1154 bp upstream
Tssr97087	transcription start site region 97087	1128 bp upstream
Tssr97088	transcription start site region 97088	1068 bp upstream
Tssr97089	transcription start site region 97089	1053 bp upstream
Tssr97090	transcription start site region 97090	1022 bp upstream
Tssr97091	transcription start site region 97091	627 bp upstream
Tssr97092	transcription start site region 97092	608 bp upstream
Tssr97093	transcription start site region 97093	581 bp upstream
Tssr97094	transcription start site region 97094	570 bp upstream
Tssr97095	transcription start site region 97095	553 bp upstream
Tssr97096	transcription start site region 97096	268 bp upstream
Tssr97097	transcription start site region 97097	21 bp upstream
Tssr97098	transcription start site region 97098	123 bp downstream
Tssr97099	transcription start site region 97099	1238 bp downstream
Tssr97100	transcription start site region 97100	1276 bp downstream