rs224775686 SNP Detail

Summary

• ID
  rs224775686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8797266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACAGTCA AAGAATAAGC
  AAGAGAGGAC ATCGAGTAAG CCCTAGGGTG CTCCGGTAAT TGGGAGCGGG CAGGAAGTAA
  GAGACCTGAG ATGGGCGGGA CTCCGGCGCG ACTGCGCAGA GCCTACGACT GAAGTACGGA
  AAGAGGAGCG CGCTCACGCT TCCGTGCTAC GAGGCACTTG AGCCGCAGCC AGCCTTGCCC
  K
  ACTCAGGCCC CTGTGCGGCT GCGCGGTTAG GCCGCTTGCG CTGATTGGCC CGGATCTCTG
  AGAGGAGGGA GGGGAAGTGA GGGAACTCCG TCGTCCTCGG CGCGCACTCC CCCGCGGTCG
  AGTACAGAGT GTGTCGGAAG CTGCTCCTCG CCGTCTTGTT TTGCGCTCAG TGAGCCGAAA
  GGGGCAGGGC AGGAGGAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708501	MGP_WTSI_19_8894392	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224775686					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708501	MGP_WTSI_19_8894392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8797266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	within coordinates
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	108 bp upstream
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	within coordinates
Tssr154829	transcription start site region 154829	328 bp downstream
Tssr154830	transcription start site region 154830	294 bp downstream
Tssr154831	transcription start site region 154831	64 bp upstream
Tssr154832	transcription start site region 154832	147 bp upstream
Tssr154833	transcription start site region 154833	163 bp upstream
Tssr154834	transcription start site region 154834	226 bp upstream
Tssr154835	transcription start site region 154835	314 bp upstream
Tssr154836	transcription start site region 154836	351 bp upstream
Tssr154837	transcription start site region 154837	768 bp upstream
Tssr154838	transcription start site region 154838	791 bp upstream
Tssr158063	transcription start site region 158063	1190 bp upstream
Tssr158064	transcription start site region 158064	894 bp upstream
Tssr158065	transcription start site region 158065	711 bp upstream
Tssr158066	transcription start site region 158066	651 bp upstream
Tssr158067	transcription start site region 158067	601 bp upstream
Tssr158068	transcription start site region 158068	552 bp upstream
Tssr158069	transcription start site region 158069	112 bp upstream
Tssr158070	transcription start site region 158070	1408 bp downstream
Ttc9c	tetratricopeptide repeat domain 9C	569 bp upstream