rs224782517 SNP Detail

Summary

• ID
  rs224782517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112792692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAGCCC TCCCGGAATC
  GGGAATCGGT CCCTGGCCAG CAGACAGACG GTTGGGGCTC GGCGCTGCTA AAAGCCAGGG
  AAGGTCCAGT CCCCCGAAAC TGCGCACAGC AAGCGGCGGC CAGCTCGAAA GGTGAGGTGG
  AAGACCGACG CGGGGTGAAC CAAAGAAGAG GGGACCGCGG AGAAAGGCAA GGCCACGGGA
  R
  GAAGAGAGAG CGGAAGCAGG GGAGCGTGGG CGGAGGGCGG GACGGCCAGC TCAGACCCGC
  CGCTCCGGCT CTCGGTATGT GTCACTCAAC ACGCCGCGGC GTCGTGAGCG CCGAAGGGCG
  GCCGGCGCAG GAAGCCCGAG GACCCTGAGG CCGCCCGACC GCCCCGGGGG TGCTCTGCGC
  CGACGCCGCC CATGCCGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324171473	CHEV_12_114067283	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224782517					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112792692 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	within coordinates
Gm52009	predicted gene, 52009	within coordinates
Gm56552	predicted gene, 56552	513 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	within coordinates
Tssr3960	transcription start site region 3960	384 bp downstream
Tssr115439	transcription start site region 115439	76 bp upstream
Tssr115440	transcription start site region 115440	588 bp upstream
Tssr115441	transcription start site region 115441	1946 bp upstream
Tssr117911	transcription start site region 117911	within coordinates
Tssr117912	transcription start site region 117912	279 bp downstream
Tssr117913	transcription start site region 117913	414 bp downstream