rs224798368 SNP Detail

Summary

• ID
  rs224798368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140690094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGGCTTC AGCCTTCTGG
  GTGCTGGGAT TAAAGGTGTG AGCCACCACC ACCACCCGAC TTGTGCATCC CTTTGCATGC
  ACACCTATCA CACCAGCACT CCAAAGGCTG ATGCAGCAAG ATCAGGAGTT TAAGGACATC
  CTCAGCCCCA CACGGAATCC AAGGCCAACC TGGGCTACTT GGGACCCTGT CTCAACAAAA
  M
  CAGACAGTGC CTTACCAGAG CCTCAGGCTG GTGTCCCAGA TATTCAGTTA ATGATTCTGT
  TTTTGTTGTT GAGAATGTTA TGCATGAGTA CTGTATTTAA ATAATTTCCA CCCCCTCTCT
  CCTCCCATGC CTCCCCTCCC TTTCACACTC ATGACTTCTT TAATTATCAT TGCTAAATAT
  ATACATACAC AATCTCTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363508417	MGP_WTSI_4_140518698	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224798368					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363508417	MGP_WTSI_4_140518698	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140690094 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15201	CpG island 15201			699 bp distal
Gm34431	predicted gene, 34431			1341 bp upstream
Gm68270	predicted gene, 68270			1533 bp upstream
Rr367768	regulatory region 367768			605 bp downstream
Rr398643	regulatory region 398643			1874 bp upstream
Rr603592	regulatory region 603592			1570 bp distal
Rr603593	regulatory region 603593			1588 bp distal
Rr603594	regulatory region 603594			1053 bp distal
Rr603595	regulatory region 603595			1475 bp distal
Rr603596	regulatory region 603596			within coordinates
Rr603597	regulatory region 603597			621 bp proximal
Rr603598	regulatory region 603598			945 bp proximal
Rr603599	regulatory region 603599			1228 bp proximal
Rr603600	regulatory region 603600			1989 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)			Intron
				Noncoding-Transcript-Variant
Tssr40003	transcription start site region 40003			1490 bp downstream
Tssr40004	transcription start site region 40004			1471 bp downstream
Tssr40005	transcription start site region 40005			1381 bp downstream
Tssr40006	transcription start site region 40006			1368 bp downstream
Tssr40007	transcription start site region 40007			411 bp upstream