rs224799805 SNP Detail

Summary

• ID
  rs224799805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGTCT CTCATTCATG
  TTCCTATAGG CTAACCTGAC CTAGAAAATC CCTCACGGGC AAGCTCATAG GTTTGCCCCT
  AGATGATTCT AGAGCCCGTC AGGGAGTCAG TCATTAACCA TCTTGCACAC GCATGAGATA
  TTCTGTTTCA AACAAAAAGT GGAAGGTACC CAAGGACCAG AACTTATCCT AATGACCATG
  Y
  ACACGCTATG CTCCCTGCAC TCCTGGAACT GCTTCCAAGC AAGTGGCTGT CTCCTCTGCA
  GCCCTGTCCC AAGCCCTCAA CACCACGGTG CTGCAGGGCA TGGCCGGCCA GTCCTTGAGG
  GTGTCATGTA CTTATGACGC CTTGAAGCAC TGGGGGAGAC GCAAGGCCTG GTGTCGGCAG
  CTGGGTGAGG AGGGCCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408121	CHEV_17_48487720	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224799805					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655423 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1422 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1978 bp downstream
Tssr145094	transcription start site region 145094	1950 bp downstream
Tssr145095	transcription start site region 145095	1902 bp downstream
Tssr145096	transcription start site region 145096	1869 bp downstream
Tssr145097	transcription start site region 145097	864 bp downstream
Tssr145098	transcription start site region 145098	522 bp downstream
Tssr145099	transcription start site region 145099	85 bp upstream
Tssr145100	transcription start site region 145100	114 bp upstream
Tssr145101	transcription start site region 145101	151 bp upstream
Tssr145102	transcription start site region 145102	250 bp upstream
Tssr148525	transcription start site region 148525	295 bp downstream