rs224800399 SNP Detail

Summary

• ID
  rs224800399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108216343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCCGTT GTTATTGCCA
  GAGGCCATCT TCCTAGGCGG GACTCTAGAC TAATTAAGAA ACGGTTGAGT AAGACAGAGC
  TGGAAGATCC CCGCCTAAGC AAGCAGCTTC CTTCCAGACT AGTGCTACAG GAGCTAGACC
  AGACCCGCCC TAGGCACCTC CAGGCGCTTT AGCCCGGCCG CACCCTCTTC CCTGTTCCTC
  R
  ATGGGGGGAG GGTAGAGGCC GGATAAGGCG GGACCCTGAG ACTTAGAGCT GGCTGCCAGC
  CGGAAAGAAA GCGATGCCAC GTGATCTCAG CACCATCCAG TTAAAAGGAG GTGCAGGGCC
  CTGTGAGCGC TAGTACGGAT TCCACGTTTG AGTCCCAACA TCTCCAGTAT GTGTGCTGCT
  CGGCTCTCCG CGGCGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864953	MGP_WTSI_9_108241475	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224800399					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864953	MGP_WTSI_9_108241475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108216343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	within coordinates
Gm37401	predicted gene, 37401	871 bp upstream
Gm57050	predicted gene, 57050	within coordinates
Gpx1	glutathione peroxidase 1	within coordinates
Rhoa	ras homolog family member A	1201 bp downstream
Rr383883	regulatory region 383883	within coordinates
Rr686784	regulatory region 686784	882 bp distal
Rr686785	regulatory region 686785	within coordinates
Rr686786	regulatory region 686786	980 bp proximal
Tssr3010	transcription start site region 3010	598 bp upstream
Tssr87087	transcription start site region 87087	1845 bp downstream
Tssr87088	transcription start site region 87088	1663 bp downstream
Tssr87089	transcription start site region 87089	1603 bp downstream
Tssr87090	transcription start site region 87090	74 bp downstream
Tssr87091	transcription start site region 87091	46 bp downstream
Tssr87092	transcription start site region 87092	77 bp upstream
Tssr87093	transcription start site region 87093	99 bp upstream
Tssr87094	transcription start site region 87094	123 bp upstream
Tssr87095	transcription start site region 87095	144 bp upstream
Tssr87096	transcription start site region 87096	164 bp upstream
Tssr87097	transcription start site region 87097	632 bp upstream
Tssr87098	transcription start site region 87098	784 bp upstream
Tssr87099	transcription start site region 87099	1154 bp upstream
Tssr91519	transcription start site region 91519	732 bp downstream
Tssr91520	transcription start site region 91520	777 bp downstream
Tssr91521	transcription start site region 91521	924 bp downstream
Tssr91522	transcription start site region 91522	982 bp downstream
Tssr91523	transcription start site region 91523	1175 bp downstream