rs224807954 SNP Detail

Summary

• ID
  rs224807954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137045028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAATCCA TTAGCATCCT CCTCTAGTAA GCCTGTACCT
  AAACGTATAT GAAAGATTAA TTGGTTGGGA TGTGAAATCT GTGACTGCGG AATTCAGGAA
  Y
  CTTCTGACTC CATTCTTCAC ACAAGCACTG TGTTCAGGGG TCGGGCTGTG CAACCATCCT
  GTATAAAGCA GTCATCACTA AGAGCAAAGA GGCTACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320975379	CHEV_3_137002231	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224807954					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137045028 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	1796 bp upstream
Rr585936	regulatory region 585936	1520 bp proximal
Tssr31897	transcription start site region 31897	1765 bp upstream
Tssr31898	transcription start site region 31898	1809 bp upstream
Tssr31899	transcription start site region 31899	1836 bp upstream
Tssr31900	transcription start site region 31900	1880 bp upstream
Tssr31901	transcription start site region 31901	1912 bp upstream
Tssr31902	transcription start site region 31902	1945 bp upstream