rs224813723 SNP Detail

Summary

• ID
  rs224813723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122531904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCCTCC TGCCTCAGCC
  TCCTAGGTAG CCAGGATGAC AAGCCCGTCC GGCATCACCG TGTTTGGCTT TGGAAGATTC
  ATGATTCCTA TAGTTAGTAT ATGTGAAGAC CCAGAGTTAC TGTCCAAATG AGCCCCCGCA
  TCTCCGGATG ACACTGTCTT CCAGAGGTCT TGAGTTCAGT TACTAGCACC CACAGGGCAA
  Y
  TTACTACCTA TAATCGGATC TGATGCCCTC TTCTAGTATG TAGGCATACA GTTTTCTAAA
  AATGATGTGG CATGAAAGTT TTTAGTAGGT GGGGCAGATT TATAGAATAT TGGCTTTTGA
  AGGGTTGTTT ACCATTAATG GAGGGAAATT CCCAGCATTC TCAAACTACC CTTTAAGAGC
  ACTGGAGTTT TGTCCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366516909	MGP_WTSI_5_122843850	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224813723					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366516909	MGP_WTSI_5_122843850	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122531904 () rs orientation: forward

Symbol	Name	Function Class
Arpc3	actin related protein 2/3 complex, subunit 3	within coordinates
Cpgi16551	CpG island 16551	1128 bp distal
Gm32853	predicted gene, 32853	530 bp upstream
Gm57265	predicted gene, 57265	1964 bp downstream
Rr109028	regulatory region 109028	within coordinates
Rr124310	regulatory region 124310	703 bp distal
Rr399327	regulatory region 399327	1835 bp downstream
Rr399328	regulatory region 399328	73 bp upstream
Tssr48682	transcription start site region 48682	1913 bp downstream
Tssr48683	transcription start site region 48683	1883 bp downstream
Tssr48684	transcription start site region 48684	1881 bp downstream
Tssr48685	transcription start site region 48685	1567 bp downstream