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rs224819149 SNP Detail
Summary
  • ID
    rs224819149
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127195 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCATCATC GTCCTATTTC
ATTTCCTCTT CCTCATCCTT CATACCTTCC TCCTGTATCT CCTGTTCATC CTTCTACATT
TCCTCTTCGT ATCTATTTCC TCCTCCTCCT CAATCTCCTA CCTATACTTC ATCTCCTCTT
TCTCTATCTC CTCCTACTCT TCTACATCCC TTTACTTCTC CATCTCCTCC TCTGTTTTCT
Y
CTCCATCTGC TCTCCCTTTT CTTTCCATCC ATATCATTCC TTATCTATCT CTCTTCTCTG
CTGTTTCCTC TGCCATCTTT CTCAGTTTTG TTCTTCTACA TCTATCCTCC TCCGCTGCCT
CCTCCTTTTA CTTTGCCTGC TTCCTGCTCC ATCTTCTCTT TCTCCAGCTC CTCTTCCACC
TTCTCCTTCT CTCCCATCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156091 MGP_WTSI_7_51733141 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224819149 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156091 MGP_WTSI_7_51733141 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127195 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1417 bp downstream
Tssr2223 transcription start site region 2223 1238 bp downstream
Tssr2224 transcription start site region 2224 392 bp downstream
Tssr2225 transcription start site region 2225 352 bp downstream
Tssr2226 transcription start site region 2226 167 bp upstream
Tssr2227 transcription start site region 2227 1240 bp upstream
Tssr66196 transcription start site region 66196 1984 bp downstream
Tssr66197 transcription start site region 66197 1839 bp downstream
Tssr66198 transcription start site region 66198 1808 bp downstream
Tssr66199 transcription start site region 66199 1798 bp downstream
Tssr66200 transcription start site region 66200 1775 bp downstream
Tssr66201 transcription start site region 66201 1757 bp downstream
Tssr66202 transcription start site region 66202 1742 bp downstream
Tssr66203 transcription start site region 66203 1720 bp downstream
Tssr66204 transcription start site region 66204 1664 bp downstream
Tssr66205 transcription start site region 66205 1640 bp downstream
Tssr66206 transcription start site region 66206 1627 bp downstream
Tssr66207 transcription start site region 66207 1607 bp downstream
Tssr66208 transcription start site region 66208 1593 bp downstream
Tssr66209 transcription start site region 66209 1562 bp downstream
Tssr66210 transcription start site region 66210 1529 bp downstream
Tssr66211 transcription start site region 66211 1489 bp downstream
Tssr66212 transcription start site region 66212 1446 bp downstream
Tssr66213 transcription start site region 66213 1431 bp downstream
Tssr66214 transcription start site region 66214 1399 bp downstream
Tssr66215 transcription start site region 66215 1369 bp downstream
Tssr66216 transcription start site region 66216 1322 bp downstream
Tssr66217 transcription start site region 66217 1250 bp downstream
Tssr66218 transcription start site region 66218 1196 bp downstream
Tssr66219 transcription start site region 66219 1154 bp downstream
Tssr66220 transcription start site region 66220 1120 bp downstream
Tssr66221 transcription start site region 66221 1101 bp downstream
Tssr66222 transcription start site region 66222 1048 bp downstream
Tssr66223 transcription start site region 66223 981 bp downstream
Tssr66224 transcription start site region 66224 958 bp downstream
Tssr66225 transcription start site region 66225 938 bp downstream
Tssr66226 transcription start site region 66226 925 bp downstream
Tssr66227 transcription start site region 66227 884 bp downstream
Tssr66228 transcription start site region 66228 881 bp downstream
Tssr66229 transcription start site region 66229 868 bp downstream
Tssr66230 transcription start site region 66230 848 bp downstream
Tssr66231 transcription start site region 66231 813 bp downstream
Tssr66232 transcription start site region 66232 801 bp downstream
Tssr66233 transcription start site region 66233 779 bp downstream
Tssr66234 transcription start site region 66234 749 bp downstream
Tssr66235 transcription start site region 66235 729 bp downstream
Tssr66236 transcription start site region 66236 702 bp downstream
Tssr66237 transcription start site region 66237 681 bp downstream
Tssr66238 transcription start site region 66238 662 bp downstream
Tssr66239 transcription start site region 66239 611 bp downstream
Tssr66240 transcription start site region 66240 530 bp downstream
Tssr66241 transcription start site region 66241 518 bp downstream
Tssr66242 transcription start site region 66242 438 bp downstream
Tssr66243 transcription start site region 66243 424 bp downstream
Tssr66244 transcription start site region 66244 373 bp downstream
Tssr66245 transcription start site region 66245 311 bp downstream
Tssr66246 transcription start site region 66246 283 bp downstream
Tssr66247 transcription start site region 66247 236 bp downstream
Tssr66248 transcription start site region 66248 195 bp downstream
Tssr66249 transcription start site region 66249 172 bp downstream
Tssr66250 transcription start site region 66250 153 bp downstream
Tssr66251 transcription start site region 66251 128 bp downstream
Tssr66252 transcription start site region 66252 97 bp downstream
Tssr66253 transcription start site region 66253 69 bp downstream
Tssr66254 transcription start site region 66254 21 bp downstream
Tssr66255 transcription start site region 66255 within coordinates
Tssr66256 transcription start site region 66256 23 bp upstream
Tssr66257 transcription start site region 66257 59 bp upstream
Tssr66258 transcription start site region 66258 89 bp upstream
Tssr66259 transcription start site region 66259 118 bp upstream
Tssr66260 transcription start site region 66260 234 bp upstream
Tssr66261 transcription start site region 66261 260 bp upstream
Tssr66262 transcription start site region 66262 277 bp upstream
Tssr66263 transcription start site region 66263 283 bp upstream
Tssr66264 transcription start site region 66264 293 bp upstream
Tssr66265 transcription start site region 66265 322 bp upstream
Tssr66266 transcription start site region 66266 365 bp upstream
Tssr66267 transcription start site region 66267 393 bp upstream
Tssr66268 transcription start site region 66268 422 bp upstream
Tssr66269 transcription start site region 66269 442 bp upstream
Tssr66270 transcription start site region 66270 493 bp upstream
Tssr66271 transcription start site region 66271 511 bp upstream
Tssr66272 transcription start site region 66272 577 bp upstream
Tssr66273 transcription start site region 66273 589 bp upstream
Tssr66274 transcription start site region 66274 604 bp upstream
Tssr66275 transcription start site region 66275 612 bp upstream
Tssr66276 transcription start site region 66276 641 bp upstream
Tssr66277 transcription start site region 66277 649 bp upstream
Tssr66278 transcription start site region 66278 681 bp upstream
Tssr66279 transcription start site region 66279 728 bp upstream
Tssr66280 transcription start site region 66280 767 bp upstream
Tssr66281 transcription start site region 66281 798 bp upstream
Tssr66282 transcription start site region 66282 824 bp upstream
Tssr66283 transcription start site region 66283 838 bp upstream
Tssr66284 transcription start site region 66284 855 bp upstream
Tssr66285 transcription start site region 66285 870 bp upstream
Tssr66286 transcription start site region 66286 907 bp upstream
Tssr66287 transcription start site region 66287 925 bp upstream
Tssr66288 transcription start site region 66288 961 bp upstream
Tssr66289 transcription start site region 66289 1009 bp upstream
Tssr66290 transcription start site region 66290 1070 bp upstream
Tssr66291 transcription start site region 66291 1099 bp upstream
Tssr66292 transcription start site region 66292 1137 bp upstream
Tssr66293 transcription start site region 66293 1155 bp upstream
Tssr66294 transcription start site region 66294 1176 bp upstream
Tssr66295 transcription start site region 66295 1461 bp upstream
Tssr66296 transcription start site region 66296 1594 bp upstream
Tssr66297 transcription start site region 66297 1637 bp upstream
Tssr66298 transcription start site region 66298 1662 bp upstream
Tssr66299 transcription start site region 66299 1731 bp upstream
Tssr66300 transcription start site region 66300 1738 bp upstream
Tssr66301 transcription start site region 66301 1762 bp upstream
Tssr66302 transcription start site region 66302 1776 bp upstream
Tssr66303 transcription start site region 66303 1817 bp upstream
Tssr66304 transcription start site region 66304 1825 bp upstream
Tssr66305 transcription start site region 66305 1835 bp upstream
Tssr66306 transcription start site region 66306 1869 bp upstream
Tssr66307 transcription start site region 66307 1926 bp upstream
Tssr66308 transcription start site region 66308 1979 bp upstream
Tssr66309 transcription start site region 66309 2000 bp upstream
Tssr72198 transcription start site region 72198 1987 bp upstream
Tssr72199 transcription start site region 72199 288 bp upstream
Tssr72200 transcription start site region 72200 658 bp downstream
Tssr72201 transcription start site region 72201 1159 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory