rs224820944 SNP Detail

Summary

• ID
  rs224820944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79493763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTCCATA TGTATCTGTT
  TGTGTAGATA GATGCCCACA TATGTGACTG AGCAAGTGAA CAAGTCATTC CAGAAGAAGT
  CCCTTTTGAA GTTCCCCAGC CTTCATCTCC ACCCTGCCCC TGCCCAAAAG GCATCTTAAG
  AGAACTATTA ACATCCTCTG AGCCCTCTTC CAGCCCATCT GATCCTCCAG GCCTTCATCC
  W
  CCTGCCACCC TGGCCCCTGG CCTCCAGGAA AGTGTTAGAT GAGCATGTGG TAAGGGGATC
  AGGTGTGTGG AGCTGCCGTC TACTCTGGCT AGCCAGGCCA GCATCTGTGT TTGAGGTGTC
  TAGAACTTCT GATGGTCTAC CTTTCAGGCT GGGGGTTACA CAGAGCTCTC TGGTCTCCCC
  CACCTTTGAC AGCAGAGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032986	MGP_WTSI_7_86988901	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224820944					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032986	MGP_WTSI_7_86988901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79493763 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	within coordinates
Rr649722	regulatory region 649722	1582 bp distal
Rr649723	regulatory region 649723	1146 bp distal
Rr649724	regulatory region 649724	37 bp proximal
Tssr67372	transcription start site region 67372	1925 bp downstream
Tssr67373	transcription start site region 67373	1506 bp downstream
Tssr67374	transcription start site region 67374	1466 bp downstream
Tssr67375	transcription start site region 67375	1430 bp downstream
Tssr73170	transcription start site region 73170	1999 bp upstream
Tssr73171	transcription start site region 73171	1914 bp upstream
Tssr73172	transcription start site region 73172	1902 bp upstream
Tssr73173	transcription start site region 73173	1884 bp upstream
Tssr73174	transcription start site region 73174	1798 bp upstream
Tssr73175	transcription start site region 73175	1770 bp upstream
Tssr73176	transcription start site region 73176	1713 bp upstream
Tssr73177	transcription start site region 73177	1687 bp upstream
Tssr73178	transcription start site region 73178	1661 bp upstream
Tssr73179	transcription start site region 73179	1596 bp upstream
Tssr73180	transcription start site region 73180	1506 bp upstream
Tssr73181	transcription start site region 73181	1440 bp upstream
Tssr73182	transcription start site region 73182	1428 bp upstream
Tssr73183	transcription start site region 73183	1389 bp upstream
Tssr73184	transcription start site region 73184	732 bp upstream
Tssr73185	transcription start site region 73185	509 bp downstream