rs224821899 SNP Detail

Summary

• ID
  rs224821899
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115653587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAACTCCC GCCATCCAAG ATGGCGGCAC
  CAGCACCCGC GAAGAAGACG CTCTCAGGCT ATCCCGGGCG AGCTAGCCCT GCGCTCGACA
  CTCGTCTCCA CGACCTGCGG CGCCGCCGGG CTCACTGCCT CTGCGCGAGC TCCTGGGCTC
  S
  GCAGTCCGCT TAAAACTCGG CTCGGGGATC TATCGCTCGA GCCTGGAATG TGGCCCCGCC
  TCCGGGGGCG TGGCCTCGCG GTCCTGCGGC CGCCATTTCG GGGTTGACTC CGTGGTAGCA
  GAGTGACTGT TTCTGGTTGG AGGCCAGTGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916362	CHEV_6_115626644	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224821899					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115653587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	within coordinates
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	mRNA-UTR
Rr399847	regulatory region 399847	within coordinates
Rr637016	regulatory region 637016	673 bp distal
Rr637017	regulatory region 637017	621 bp distal
Rr637018	regulatory region 637018	2 bp distal
Rr637019	regulatory region 637019	within coordinates
Tssr58320	transcription start site region 58320	670 bp downstream
Tssr58321	transcription start site region 58321	622 bp downstream
Tssr58322	transcription start site region 58322	88 bp upstream
Tssr62522	transcription start site region 62522	739 bp upstream
Tssr62523	transcription start site region 62523	48 bp upstream
Tssr62524	transcription start site region 62524	8 bp upstream
Tssr62525	transcription start site region 62525	within coordinates