rs224821935 SNP Detail

Summary

• ID
  rs224821935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGACTCT CAATATATAC
  CAACCCTTTT ATATCCACTT TAGCCTCGCC CAGCTGAGGT CTCCAGTCAG GGGAGGGCAC
  GAAATCTTGG TTCCTTATTC TCTGCCCACC CAGTCACACA GAAGGCATGT TCTGGGACCT
  CCTTTCAGGG CTCAGATGAG AAGTCCTTGA GGCCCTGGGG TGGAGCATGT TACCTTCTTG
  R
  ACTGGATGCC TGCTCTCTTT GATGAAGTTT GGGGCAGAGT AGATGACACA AGAATCTGTA
  GAAGGCCAGA TCCTGTGACA CAGATCAAAC TTTGGGCTGG CTCATGGCAG GACAAAAAGT
  ATGAAATTAC GGGAAGGAGC AGGATATAGC TTTAAAGAAT GCCAATGTTG CCATTCCATG
  GTTGTGTGGC CTGGGATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187856	MGP_WTSI_7_53177004	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224821935					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187856	MGP_WTSI_7_53177004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1332 bp proximal
Emp3	epithelial membrane protein 3	230 bp upstream
Gm45442	predicted gene 45442	506 bp downstream
Rr368318	regulatory region 368318	1122 bp upstream
Rr368319	regulatory region 368319	1342 bp upstream
Rr400324	regulatory region 400324	within coordinates
Rr400325	regulatory region 400325	1723 bp upstream
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	417 bp proximal
Rr646611	regulatory region 646611	1548 bp proximal
Tssr2257	transcription start site region 2257	1206 bp downstream
Tssr66661	transcription start site region 66661	1567 bp upstream
Tssr66662	transcription start site region 66662	1900 bp upstream
Tssr72490	transcription start site region 72490	1441 bp upstream
Tssr72491	transcription start site region 72491	1213 bp upstream
Tssr72492	transcription start site region 72492	998 bp upstream
Tssr72493	transcription start site region 72493	966 bp upstream
Tssr72494	transcription start site region 72494	956 bp upstream
Tssr72495	transcription start site region 72495	940 bp upstream
Tssr72496	transcription start site region 72496	854 bp upstream
Tssr72497	transcription start site region 72497	751 bp upstream
Tssr72498	transcription start site region 72498	507 bp upstream
Tssr72499	transcription start site region 72499	322 bp upstream
Tssr72500	transcription start site region 72500	187 bp upstream
Tssr72501	transcription start site region 72501	1554 bp downstream
Tssr72502	transcription start site region 72502	1785 bp downstream