rs224822361 SNP Detail

Summary

• ID
  rs224822361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGAATA TTTGTCTAGA
  GATCAGTTTT CAATAGGCCA GGAGCAAGAT AGTCGATTTT TATTAATAAC GAAAAGTATT
  AAATAGAAAT AAAGTGAAAG ATGAAGACCT TTAGATCGGA GGGTGTTGAA GCCATGGCGG
  TTGAAACAGA TGACAGTGGG AATGGTTGAG GTCCCAGAGT ACGAGGGTGC TGACTTCTCA
  Y
  CTGTCTCCTG CCATGCTTAG GAAGCCCTGG ACTTGTTTGT TTCTGTTCTA CATCTCAAAG
  AAGTTCTGCA GATTGTGAGG GGGTGGAAAT TAGCAAGACT GTGTAAGAAC CTTGTGAAGA
  TGTTAATACT GGTCAATACT GGCATCAAGG GGTCTCCATC AAAGGGCAGA CACGGGAGAC
  GACCCAGACC TGGTCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494093	CHEV_8_11839140	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224822361					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889140 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Tex29	testis expressed 29	1348 bp upstream
Tssr76253	transcription start site region 76253	1361 bp upstream
Tssr76254	transcription start site region 76254	1374 bp upstream
Tssr76255	transcription start site region 76255	1428 bp upstream