rs224826689 SNP Detail

Summary

• ID
  rs224826689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45321430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTGAAAG ACTGAGAGTA
  AGACTCCGAG GTAGGCAGAT AAGGAGAGGA GCCACGGCTA GGTAACAGGT GATGAATTGT
  CAAGTTGGCT AACTTCTTCC TCAACCTCAA CCTCCTAACT CAATACAAGC TTAGCAGCCT
  CAAAAAAAGG CTGTGTAGGC TTTTGTGTAG AGGGTAGGAG GGCATGTGCT TCCAGGTAGT
  M
  CTATAGAAAC CAGAATTGTT AAACATGCAG ATCTTTTTCT TCAATGGAAG AAATTGACAG
  CTATTCACTT GGAAGGCTGG AATGGAGGTT GTTGAATACC AGGTAATTTT ACCATTCTGT
  GGAGCTAGCT CTCACCTGAA TCCCCCTTTT CCTGAGCATT TCCAGTCCAT AGACTCCATC
  CTTATAAGAG AGATCTCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361364509	MGP_WTSI_4_45334302	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224826689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361364509	MGP_WTSI_4_45334302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45321430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	565 bp distal
Exosc3	exosome component 3	814 bp upstream
Gm68922	predicted gene, 68922	within coordinates
Tssr37060	transcription start site region 37060	1047 bp downstream
Tssr37061	transcription start site region 37061	1033 bp downstream
Tssr37062	transcription start site region 37062	1001 bp downstream
Tssr41531	transcription start site region 41531	1147 bp upstream
Tssr41532	transcription start site region 41532	992 bp upstream
Tssr41533	transcription start site region 41533	957 bp upstream
Tssr41534	transcription start site region 41534	796 bp upstream