rs224849691 SNP Detail

Summary

• ID
  rs224849691
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40595259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGGAGA CCTGTCCTCA
  CAGGAAGAGG AAGAGGAGGA AGGCGACTCC GACGCCGGGG CCAGCAGCTT GGGCTCCTAC
  TCCTCAGCCA GCAGTGACAC GTAAGGCTCC TGGAGACTGC GGGTCCCCTG CCCTTGCTCG
  CACGCACGGG GAGCGGGGAG CAGTTCGCTG GCGGGCTTGC TCCGGTTTCT GGATAAGGGG
  T
  GGGGGTGGGG GTGGGGGTCC CTGCCTCTGG TGGGTTCTGT GTCTGTGAAG GATCATTGTT
  GTGCTCTGTA GCACTGCCTT CTTACCTCAC TGTGTCTTAG AGCATTCTTT AACATTTATT
  TTTATTATTT TTTTATTACA TGTACCTGTG TGTCTTTGTG TGGGTATCTG CACATAAGTG
  CAGGTGCCCA CAGAGGCCAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss357665726	MGP_WTSI_3_40440032	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs224849691					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357665726	MGP_WTSI_3_40440032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40595259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	8 bp distal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	199 bp downstream
Rr575837	regulatory region 575837	333 bp distal
Rr575838	regulatory region 575838	193 bp proximal
Tssr28955	transcription start site region 28955	320 bp downstream