rs224856575 SNP Detail

Summary

• ID
  rs224856575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30814530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGCCAC CAGGGGGACA
  CCTGGAGTGG CAGGTCAGAA CACCGGGCGG GCGAGGTTGA ACTTCCAGGG GACTTGAGGG
  TTTTGAGGGA GGAGAACTTG GGGGAGTCCT CAGATTTCTG AGTTAGCAGT GAAAGCAGGC
  TGGAGTAGTC TGGGGGTTTC TGGGATCTCT TACACGGGCT GCTGAACATC AGACTGGTGG
  R
  GGATGAGGGG CTTCGCATTC TGTGCCTTAC CCTGGGGTTC GCCGGAGATG GTGCAGGTTT
  GGGGTTAGTC TCCGGGCCTG GGCAGGGGCA TGGTGTCTGT CCCCACAGCA GCGGACAGCC
  CGGAAGGCAA GGGTGGCAGC AGCAGCCAGC AGCGTGGGGC CTGCCGAGCC TGCGGCCTCA
  CCTGAGGAGG AGGGGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139438	CHEV_7_31900124	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224856575					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30814530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	830 bp proximal
Hpn	hepsin	within coordinates
Scn1b	sodium channel, voltage-gated, type I, beta	1419 bp downstream
Tssr71932	transcription start site region 71932	389 bp upstream
Tssr71933	transcription start site region 71933	122 bp downstream
Tssr71934	transcription start site region 71934	1787 bp downstream