rs224859818 SNP Detail

Summary

• ID
  rs224859818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85592623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAGCCAG CCATTTCCAA
  AGATCTGATA CTGTGCTAGC CCCAGGGTTG AGAGTACCCA GAGGGACTCT CTGAGTACTC
  TCTGAGAGCA ACAGGGATGG CTTCCCAAAG TAGGGGCTAT CTGAGCTGGG TCTTGATGGC
  TGTATAGGAG TTGGCAGCTA GAGACACAGG AGTGGACACT CAGACACTCC GTGGCATGCC
  M
  CATTGTCTCC TCCCTGCTGT CCTTTGGAAC ATCGATGGTG GATGATAAAT TGTCACCTTT
  TTACCTCTCT TTATCCTGTA GTCAGTGGTG AAGTCTGTTG ACTCTTGCTA TGCCTCCAGC
  CCTAGAGGAG TAGTCCTTCC TCCCCTCCCT TGTGCAGAGC TTTGCCCACT CTTCATCCCT
  TGCTGAATTA GTTAAGGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394812808	MGP_WTSI_15_85538852	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224859818					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394812808	MGP_WTSI_15_85538852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85592623 () rs orientation: forward

Symbol	Name	Function Class
Gm34622	predicted gene, 34622	449 bp downstream
Lncppara	long noncoding RNA near Ppara	898 bp downstream
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	1019 bp distal
Mirlet7b	microRNA let7b	1019 bp downstream
Mirlet7c-2	microRNA let7c-2	1725 bp downstream
Rr507293	regulatory region 507293	1042 bp distal
Rr507294	regulatory region 507294	96 bp proximal
Rr507295	regulatory region 507295	1088 bp proximal
Rr507296	regulatory region 507296	1961 bp proximal
Rr507297	regulatory region 507297	1987 bp proximal