rs224862419 SNP Detail

Summary

• ID
  rs224862419
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132821608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGATAT GATTTTGAAT
  TCAGTGTTTG AGCATTTTAT TGAGAATTTA TTGAATATCA CAGTTACCGG TTTTATAAAA
  AGAGTTTGTA AACCCTCCTT TTCTGTTTTA TGAAGTAACT TGAGTAGGTT TGGTAGGAGT
  GTTCTTGGAA GATCTAGTAG AATTCTTCAG TGAAGCCATC TGTGTTTTTT TTTTTTTTTT
  W
  GTTGGTGGGT TTTTATTACT GCTTTAATCT CATTGCTGGC TATAGATCTG TTTAAATGAA
  TTTCCGTATG CCACATGTGT CTGGAAGTTC ACCCCCCCCC CCTGAGATTT TCAGCTTAGT
  GGAGTGGGGT TAGCTCAGGT CTGTCCTCCT GACTTTCTGA GTTTCATCAG TAACTGTTGT
  AATGTCTCAC TTTTCATCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355720280	MGP_WTSI_2_132805424	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224862419					SNP	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355720280	MGP_WTSI_2_132805424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132821608 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	481 bp downstream