rs224869628 SNP Detail

Summary

• ID
  rs224869628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATATTCA GGCTCGATCC
  CAGGAGGGAG GCGGGGCACT TGTGTGCTGT GAAACTTTAC AGTTCGCACA ACAGAAAATT
  TTCACCTTAA AAAATTGCGC AATGCAGGAA ATTTTCTTTT AAATACACTA TGTACACACA
  TATAACACTT GGGTGGGTGA AAAAGAAGTT AGAAAATGGC ACTCCTCAGG AAAAATAACA
  W
  AAAGAATCTC AATAAGGGGG AAAGGGAGGA AATAGAGAAA ACGCGCATTG CAGGAAAAAT
  AAGCCAGACA AAGGCACTTA CTAGGAGAAA AATGGATTAG ATAAAAGTGC ATTGGAAAAG
  AAACAAAGAA ACGAAAAAAA AAAAAAAAAA AACCGAATTG GAAACACACT AGAGAAAAAA
  ATGCCCCTTG CAGGACAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262042	MGP_WTSI_2_157386485	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224869628					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262042	MGP_WTSI_2_157386485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402669 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	155 bp distal
Cpgi12576	CpG island 12576	711 bp proximal
Gm56190	predicted gene, 56190	1612 bp downstream
Nnat	neuronatin	within coordinates
Rr568541	regulatory region 568541	1879 bp distal
Rr568542	regulatory region 568542	1994 bp distal
Rr568543	regulatory region 568543	609 bp distal
Rr568544	regulatory region 568544	1598 bp proximal
Tssr721	transcription start site region 721	1692 bp downstream
Tssr21268	transcription start site region 21268	630 bp downstream
Tssr21269	transcription start site region 21269	145 bp downstream
Tssr21270	transcription start site region 21270	74 bp downstream
Tssr21271	transcription start site region 21271	16 bp upstream
Tssr21272	transcription start site region 21272	63 bp upstream
Tssr21273	transcription start site region 21273	726 bp upstream
Tssr21274	transcription start site region 21274	968 bp upstream
Tssr21275	transcription start site region 21275	1023 bp upstream
Tssr21276	transcription start site region 21276	1124 bp upstream
Tssr21277	transcription start site region 21277	1153 bp upstream
Tssr21278	transcription start site region 21278	1188 bp upstream
Tssr21279	transcription start site region 21279	1280 bp upstream
Tssr21280	transcription start site region 21280	1359 bp upstream
Tssr21281	transcription start site region 21281	1406 bp upstream
Tssr21282	transcription start site region 21282	1531 bp upstream
Tssr21283	transcription start site region 21283	1545 bp upstream
Tssr27183	transcription start site region 27183	113 bp downstream
Tssr27184	transcription start site region 27184	220 bp downstream
Tssr27185	transcription start site region 27185	1103 bp downstream
Tssr27186	transcription start site region 27186	1230 bp downstream