rs224880516 SNP Detail

Summary

• ID
  rs224880516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATCCCC GCGATTTTCT
  TCAAAAACGC TTACAGCACC TGTCTCCAGG CTGCCTGCCC TTCGCTTTGA ATTCATTCTT
  TAGTTCAAGA GGAATGTCTG AGCTGGACTC AGCCAGCACT GTGTTCTGCA CTGTCACAAG
  CCAAGGGCTA CAAACGTAGC CTTTCTCCTG GATGAAGCCT CGGAGGCCCA GAGAAGCTAA
  R
  TGATTGGCCC AAGCTCACAC AGCTCCGAAG ATACAACCAA TTGGAATCAG GGGGTAGGGC
  CGCTGCAGGG TGGGGTGCTG GATAGATGTA GGCTTGGCGT GTTCTGGGTG GAGGGGGGTC
  CCCTCGCTCC TTACCCACCC CCCAGCCCCA GGAGCTACTG AAATCAGAGT GTCAGGCTGC
  TCCCCAGAGC AGCTACGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520437	MGP_WTSI_4_140981561	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224880516					SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520437	MGP_WTSI_4_140981561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	190 bp proximal
Gm70191	predicted gene, 70191	333 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	336 bp downstream
Rr603759	regulatory region 603759	344 bp distal
Rr603760	regulatory region 603760	within coordinates
Rr603761	regulatory region 603761	648 bp proximal
Rr603762	regulatory region 603762	1158 bp proximal
Tssr40063	transcription start site region 40063	1637 bp downstream
Tssr40064	transcription start site region 40064	1576 bp downstream
Tssr40065	transcription start site region 40065	1549 bp downstream
Tssr40066	transcription start site region 40066	1445 bp downstream
Tssr40067	transcription start site region 40067	1391 bp downstream
Tssr40068	transcription start site region 40068	1336 bp downstream
Tssr40069	transcription start site region 40069	1209 bp downstream
Tssr40070	transcription start site region 40070	1115 bp downstream
Tssr40071	transcription start site region 40071	1098 bp downstream
Tssr40072	transcription start site region 40072	1053 bp downstream
Tssr40073	transcription start site region 40073	1028 bp downstream
Tssr40074	transcription start site region 40074	1001 bp downstream
Tssr40075	transcription start site region 40075	977 bp downstream
Tssr40076	transcription start site region 40076	961 bp downstream
Tssr40077	transcription start site region 40077	941 bp downstream
Tssr40078	transcription start site region 40078	763 bp upstream
Tssr44315	transcription start site region 44315	1572 bp upstream
Tssr44316	transcription start site region 44316	1474 bp upstream
Tssr44317	transcription start site region 44317	1446 bp upstream
Tssr44318	transcription start site region 44318	1046 bp upstream
Tssr44319	transcription start site region 44319	43 bp upstream