rs224881203 SNP Detail

Summary

• ID
  rs224881203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTAAC TCCTGGCTGG
  AAACTTCGCA TCCCAGAGGA GCCCGTGTGA GGCCTTACAT CTCTTCTTCA AGTTCCTGAA
  CCTGGGATGA GACCACTTCG CCATTCACTA TCTCCTGCAC GACTGTCTTG ATTTTTCGAG
  TTTTATTTGG GTCTAAAGGT AAAAAACAAA CACAAACAAA CAAACAACAC AAAAGAGGAT
  R
  ATGATTATTA CTAAGCAGTT ATCAACCCAA GGTTTATTCT TGTTCAACTT AAGCTTTTCG
  TCAAATTCAG ACTTTTGCAA GTGACTCCAT TCCAAACCAA GTGAGTTTTA CTTAGTGGAA
  ATGAAATTTA TTCAGGACTG TCTTGTGCAC AAATCAAAAG GCTCAACGTC TCCCTCCATC
  TCTCTGTTCC TCTAGTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384434423	MGP_WTSI_11_99277471	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224881203					SNP	A	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384434423	MGP_WTSI_11_99277471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306983 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	1086 bp upstream
Cpgi3798	CpG island 3798	1760 bp proximal
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	984 bp upstream
Tssr104878	transcription start site region 104878	1065 bp upstream
Tssr104879	transcription start site region 104879	1118 bp upstream
Tssr110665	transcription start site region 110665	812 bp downstream