rs224881457 SNP Detail

Summary

• ID
  rs224881457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6414931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTGTG AAGGGAATCC
  AGAGGTCAGG TAGGGGCAGC ACCTGGACCA GCTGTGTTGC TCTGTGTCTC TTACTCTCCC
  TGCATGAGGG CTGCTCCAAG CCTGACCTAC TTGCAAGCAG AAACTGCCAC TCTCATTGAG
  CTACCTCAAA TTACAGTGAT TTTGCAGCTG GGGCTAGGCA TGGACCACAA AATACATCCT
  Y
  GGTGCACCAT AAGCCCAATT TGAACCCTGG ATTCTCAGTG GTAAAATGCA AATCCATTGT
  GTTGCTTACT CAATAAAATC AATAACCCGT TTCCATCCAA GTCACAATTT GTCATTTTCA
  TAGTCAGTAC ATTCTGCTTA CAACAGGGGA GGAGGGGCAG GAGGGAGAGG GAAGAAGAGG
  AGGAGCAGAA GGAAAAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392920412	MGP_WTSI_15_6335450	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224881457					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392920412	MGP_WTSI_15_6335450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6414931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6920	CpG island 6920	814 bp proximal
Dab2	disabled 2, mitogen-responsive phosphoprotein	within coordinates
Rr498794	regulatory region 498794	1077 bp distal
Rr498795	regulatory region 498795	677 bp proximal
Rr498796	regulatory region 498796	1157 bp proximal
Rr498797	regulatory region 498797	1340 bp proximal
Tssr130460	transcription start site region 130460	1220 bp upstream
Tssr130461	transcription start site region 130461	1309 bp upstream
Tssr130462	transcription start site region 130462	1410 bp upstream
Tssr130463	transcription start site region 130463	1618 bp upstream